Nov 20, 2017
Toy models to reconstruct 3D chromatin structure
In this blog, we used toy models to reconstruct 3D chromatin structure. This problem is posed as an
optimization problem. The input is 3D distance derived from Hi-C and FISH data, and the output is
the relative coordinates in 3D space.
Oct 11, 2017
Building NN, RBM, autoencoder, and RNN from scratch
In this blog, we discussed how to build some simple neural networks from scratch.
Mar 10, 2017
A light micro-colony simulator in chemotaxis
In this tutorial, I showed several models about the formation of micro-colony in chemotaxis and
how to implement such simulator. Check out the full implementation
here.